PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27166-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 188aa    MW: 20088.6 Da    PI: 10.2126
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27166-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.6e-091071471055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++RR++i +++ +L+el+P+      +K++ +++LekA  Y+k Lq
  TRIUR3_27166-P1 107 KNRREKISERLRTLQELVPNG-----TKVDMVTMLEKAFSYVKFLQ 147
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.41897146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-13102158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-12102155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.28E-12103151No hitNo description
PfamPF000101.2E-6107147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDVDQGHQHA APASTIGFDP ATGCFSLTQS SVGARRPFGL LFPGTSNGSP DAATPARGSS  60
KRSYADQDAE PRTTKKPCGA SRKTSKAKPA APTTTSPKGD PQSLTAKNRR EKISERLRTL  120
QELVPNGTKV DMVTMLEKAF SYVKFLQLQV KVLATDEFWP AQGGTAPEIS QVKEALDAIL  180
SSQRGQLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3728841e-105AK372884.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3015A08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756070.12e-93PREDICTED: transcription factor APG-like
SwissprotQ9C7075e-51BH083_ARATH; Transcription factor bHLH83
TrEMBLM7ZNX31e-137M7ZNX3_TRIUA; Transcription factor bHLH83
STRINGBRADI3G53060.12e-78(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-47ROOT HAIR DEFECTIVE6